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1. Ancona N, Maglietta R, D'Addabbo A, Liuni S, Pesole G Models for cancer classification by gene expression data Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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2. Annese V, Latiano A, Palmieri O, D'Addabbo A, Maglietta R, Liuni S, Pesole G, Ancona N Multiple Single Nucleotide Polymorphisms analysis of candidate genes in Inflammatory Bowel Diseases by using RLS classifiers Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational genetics |
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3. Anselmo A, Iacono M, Felice B, Guffanti A, Pesole G Computational detection of cancer-specific splice sites Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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4. Attimonelli M, Lanave C, Pesole G, Liuni S, D'Elia D, Catalano D, Licciulli F, Grillo G, De Robertis M, Pasimeni R, Saccone C MitBASE, AMmtDB e MitoNuc, un pool di banche dati specializzate MITOCONDRIALI. Meeting: BIOCOMP 2000 - Year: 2000 Abstract | Full text in a new tab Topic: Databanks |
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5. Boccia A, Petrillo M, Di Bernardo D, Banfi S, Guffanti A, Pesole G, Paolella G A tool for storage, automated annotation and analysis of Conserved Sequence Tags (CSTs) Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Comparative genomics and molecular evolution |
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6. Bonizzoni P, Dondi R, Rizzi R, Pesole G ASPIC: a Novel Method to Predict Alternative Splicing Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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7. Castrignanò T, D'Antonio M, D'Onorio De Meo P, Sanna N, Rizzi R, Mignone F, Bonizzoni P, Pesole G HPC for Aspic: a distributed web resource for alternative splicing prediction and transcript isoform characterization Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Structural and functional analysis of genomes |
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8. Castrignanò T, D’Antonio M, D’Onorio De Meo P, Anselmo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Bonizzoni P, Pesole G Automated data retrieval of alternative splicing sites and transcript isoformes in eukaryotic organisms Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Databases, Ontologies, Tools and Applications |
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9. Castrignanò T, Talamo IG, Grillo G, Licciulli F, Gisel A, Liuni S, Mignone F, Pesole G CSTgrid: a high performance environment for searching "Conserved Sequence Tags" Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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10. Catalano D, Licciulli F, Grillo G, Liuni S, Pesole G, Saccone C, D'Elia D MitoNuc: a database of nuclear genes encoding for mitochondrial proteins Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Unspecified |
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11. D'Antonio M, Martelli PL, Castrignanò T, Fariselli P, Casadio R, Zauli A, Pesole G Functional and structural annotation of human protein variants originated from alternative splicing in human Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Genomics |
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12. D'Onorio De Meo P, D'Antonio M, Castrignanò T, Zambelli F, Pavesi G, Pesole G A web-based service for ChIP-Seq data analysis Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: New tools for NGS |
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13. Gissi C, San Mauro D, Pesole G, Zardoya R Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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14. Grillo G, Licciulli F, Liuni S, Sbisà E, Pesole G PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Novel algorithms |
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15. Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJP, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G A transcriptional sketch of a human breast cancer by 454 deep sequencing Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Transcriptomics Gene Expression and Microarray Analysis |
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16. Horner DS, Pesole G Protein contact prediction with correlated mutation analysis using mixed physiochemical constraints Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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17. Horner DS, Pesole G The estimation of relative site variability among aligned homologous protein sequences Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Comparative genomics and molecular evolution |
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18. Horner DS, Pirovano W, Pesole G Using phylogenetic information in the detection of correlated amino acid substitutions Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Unspecified |
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19. Horner DS, Re M, Nasi C, Pesole G Improving the capacity of the CSTMiner algorithm to correctly classify conserved sequences Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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20. Iacono M, Mignone F, Anselmo A, Pesole G ESTissue: A novel method to identify gene expression profile EST based Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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21. Iacono M, Mignone F, Pesole G Genome-wide analysis of the sequence region sorrounding the transcription start site of human mRNAs Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Comparative genomics and molecular evolution |
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22. Iannelli F, Griggio F, Pesole G, Gissi C Reshaping the mtDNA circle: new insights from four newly sequenced ascidian genomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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23. Licciulli F, Caratozzolo MF, Cornacchia S, D'Elia D, D'Erchia AM, Fosso B, Grillo G, Liuni S, Mangiulli M, Manzari C, Mignone F, Paluscio AM, Picardi E, Sbisà E, Tullo A, Pesole G A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Transcriptomics |
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24. Liuni S, Attimonelli M, Lanave C, Pesole G, Brunetta S, Catalano D, Ceci LR, D'Elia D, Grillo G, Licciulli F BIOWWW: a pool of specialised databases and algorithms for the analysis of biosequences Meeting: BIOCOMP 1999 - Year: 1999 Abstract | Full text in a new tab Topic: Bioinformatics |
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25. Liuni S, Attimonelli M, Pesole G, Lanave C, Grillo G, Licciulli F, D'Elia D, Catalano D, Saccone C European Molecular Biology Network (EMBnet): Nodo Nazionale Italiano Meeting: BIOCOMP 2000 - Year: 2000 Abstract | Full text in a new tab Topic: Services |
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26. Lupi R, D'Onorio De Meo P, Picardi E, D'Antonio M, Paoletti D, Castrignanò T, Pesole G, Gissi C Investigating the gene order variability and non-coding sequences of metazoan mitochondrial genomes: design and construction of a mitogenomics database Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Biological Databases and Biobanks |
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27. Lupi R, D’Onorio De Meo P, D’Antonio M, Paoletti D, Castrignanò T, Picardi E, Pesole G, Gissi C MitoZoa: a curated database of mitochondrial genomes of Metazoa specifically developed for genomics and phylogenetic analyses Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Databases, Ontologies, Tools and Applications |
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28. Maglietta R, D'Addabbo A, Piepoli A, Perri F, Liuni S, Pesole G, Ancona N Selection and ranking of genes relevant for cancer diagnosis based on the classification ability of their expression pattern Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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29. Mignone F, Pesole G Regioni rRNA-like e upstream ORFs in sequenze UTR ? Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: |
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30. Mignone F, Re M, Horner DS, Pesole G A new strategy to identify novel genes and gene isoforms: whole genome comparison of human and mouse Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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31. Paoletti D, D'Antonio M, D'Onorio De Meo P, Chillemi G, Desideri A, Castrignanò T, Pesole G An optimized web server for metagenomics data analysis. Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Genomics |
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32. Pavesi G, Mauri G, Pesole G An Algorithm for Finding Common Secondary Structure Motifs in a Set of Unaligned RNA Sequences Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Novel algorithms |
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33. Pavesi G, Mauri G, Pesole G Pattern Discovery in Unaligned Biological Sequences Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: Novel algorithms |
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34. Pavesi G, Mauri G, Pesole G A novel method for finding oligonucleotide regulatory elements of unknown length in DNA sequences Meeting: BIOCOMP 2001 - Year: 2001 Full text in a new tab Topic: Novel algorithms |
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35. Pavesi G, Mauri G, Pesole G Weeder Web: a Web-Based Tool for the Discovery of Transcription Factor Binding Sites Meeting: BITS 2004 - Year: 2004 Abstract | Full text in a new tab Topic: Comparative genomics |
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36. Pavesi G, Stefani M, Mauri G, Pesole G An algorithm for finding regulatory sequences of homologous genes Meeting: BITS 2005 - Year: 2005 Abstract | Full text in a new tab Topic: Computer algorithms and applications |
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37. Pavesi G, Valentini G, Mauri G, Pesole G Motif based classification of coexpressed genes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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38. Pesole G Metodi per la ricerca di oligonucleotidi con attività regolatoria nelle regioni non tradotte degli mRNA eucariotici. Meeting: BIOCOMP 1999 - Year: 1999 Abstract | Full text in a new tab Topic: Bioinformatics |
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39. Pesole G, Gissi C, Grillo G, Licciulli F, Larizza A, Liuni S Structural and evolutionary analysis of eukaryotic mRNA untranslated regions Meeting: BIOCOMP 2000 - Year: 2000 Abstract | Full text in a new tab Topic: Databanks |
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40. Pesole G, Mangiulli M, Picardi E, D'Erchia AM, Castrignanò T, Rizzi R, Anselmo A, Bonizzoni P, Mignone F ASPIC: a novel bioinformatics tool to investigate the impact of alternative splicing in the expansion of human transcriptome and proteome Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools |
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41. Pesole G, Saccone C A novel method to estimate substitution rate variation among sites in large dataset of homologous DNA sequences Meeting: BIOCOMP 2001 - Year: 2001 Full text in a new tab Topic: |
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42. Picardi E, Horner DS, Chiara M, Pesole G Detection of alternative splicing in Vitis vinifera and validation by short sequencing reads Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Transcriptomics Gene Expression and Microarray Analysis |
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43. Picardi E, Horner DS, Chiara M, Schiavon R, Valle G, Pesole G Large scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Transcriptomics |
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44. Piccolo V, Mica E, Pè E, Pesole G, Horner D Definition plant microRNA primary transcripts and their splicing patterns using RNAseq Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Transcriptomics |
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45. Piccolo V, Pesole G, Horner DS A Support Vector Machine for the Discrimination of MicroRNA Precursors from Other Genomic Hairpin Structures Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools |
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46. Re M, Nasi C, Pesole G, Horner DS A Support Vector Machine for the Discrimination of Coding and Non-Coding Sequences that are Conserved Between Related Genomes. Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools |
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47. Sbisà E, Catalano D, Gisel A, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C p53FamTaG : a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |